library(tidyverse)
library(arrow)
library(qs)
library(skimr)
library(sessioninfo)
source("../../functions.R")Exploratory Data Analysis
Packages
Data load
dc_ref <- qread(file = "dc_ref.qs")Skimming
General
skim(dc_ref)| Name | dc_ref |
| Number of rows | 204270 |
| Number of columns | 30 |
| _______________________ | |
| Column type frequency: | |
| character | 7 |
| Date | 1 |
| logical | 21 |
| numeric | 1 |
| ________________________ | |
| Group variables | None |
Variable type: character
| skim_variable | n_missing | complete_rate | min | max | empty | n_unique | whitespace |
|---|---|---|---|---|---|---|---|
| CLASSI_FIN | 0 | 1 | 15 | 21 | 0 | 4 | 0 |
| CRITERIO | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| ID_MN_RESI | 0 | 1 | 6 | 6 | 0 | 4501 | 0 |
| CS_SEXO | 0 | 1 | 8 | 9 | 0 | 3 | 0 |
| CS_GESTANT | 0 | 1 | 3 | 26 | 0 | 7 | 0 |
| case_source | 0 | 1 | 12 | 17 | 0 | 2 | 0 |
| uf_res | 0 | 1 | 2 | 2 | 0 | 27 | 0 |
Variable type: Date
| skim_variable | n_missing | complete_rate | min | max | median | n_unique |
|---|---|---|---|---|---|---|
| DT_SIN_PRI | 0 | 1 | 2016-01-01 | 2023-12-30 | 2021-02-20 | 2921 |
Variable type: logical
| skim_variable | n_missing | complete_rate | mean | count |
|---|---|---|---|---|
| FEBRE | 0 | 1 | 0.75 | TRU: 153934, FAL: 50336 |
| MIALGIA | 0 | 1 | 0.69 | TRU: 141044, FAL: 63226 |
| CEFALEIA | 0 | 1 | 0.70 | TRU: 142557, FAL: 61713 |
| EXANTEMA | 0 | 1 | 0.17 | FAL: 169504, TRU: 34766 |
| VOMITO | 0 | 1 | 0.21 | FAL: 161622, TRU: 42648 |
| NAUSEA | 0 | 1 | 0.34 | FAL: 135545, TRU: 68725 |
| DOR_COSTAS | 0 | 1 | 0.30 | FAL: 143262, TRU: 61008 |
| CONJUNTVIT | 0 | 1 | 0.04 | FAL: 196168, TRU: 8102 |
| ARTRITE | 0 | 1 | 0.12 | FAL: 179882, TRU: 24388 |
| ARTRALGIA | 0 | 1 | 0.21 | FAL: 162075, TRU: 42195 |
| PETEQUIA_N | 0 | 1 | 0.09 | FAL: 186681, TRU: 17589 |
| LEUCOPENIA | 0 | 1 | 0.05 | FAL: 194390, TRU: 9880 |
| LACO | 0 | 1 | 0.03 | FAL: 197318, TRU: 6952 |
| DOR_RETRO | 0 | 1 | 0.28 | FAL: 147992, TRU: 56278 |
| DIABETES | 0 | 1 | 0.03 | FAL: 197157, TRU: 7113 |
| HEMATOLOG | 0 | 1 | 0.01 | FAL: 203189, TRU: 1081 |
| HEPATOPAT | 0 | 1 | 0.01 | FAL: 203172, TRU: 1098 |
| RENAL | 0 | 1 | 0.01 | FAL: 203187, TRU: 1083 |
| HIPERTENSA | 0 | 1 | 0.08 | FAL: 187557, TRU: 16713 |
| ACIDO_PEPT | 0 | 1 | 0.01 | FAL: 203177, TRU: 1093 |
| AUTO_IMUNE | 0 | 1 | 0.01 | FAL: 203036, TRU: 1234 |
Variable type: numeric
| skim_variable | n_missing | complete_rate | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|
| IDADEanos | 0 | 1 | 3.13 | 2.01 | 0 | 2 | 3 | 5 | 105 | ▇▁▁▁▁ |
Per diagnosis
dc_ref |>
group_by(CLASSI_FIN) |>
skim()| Name | group_by(dc_ref, CLASSI_F… |
| Number of rows | 204270 |
| Number of columns | 30 |
| _______________________ | |
| Column type frequency: | |
| character | 6 |
| Date | 1 |
| logical | 21 |
| numeric | 1 |
| ________________________ | |
| Group variables | CLASSI_FIN |
Variable type: character
| skim_variable | CLASSI_FIN | n_missing | complete_rate | min | max | empty | n_unique | whitespace |
|---|---|---|---|---|---|---|---|---|
| CRITERIO | Discarded Chikungunya | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| CRITERIO | Discarded Dengue | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| CRITERIO | Positive Chikungunya | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| CRITERIO | Positive Dengue | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| ID_MN_RESI | Discarded Chikungunya | 0 | 1 | 6 | 6 | 0 | 1331 | 0 |
| ID_MN_RESI | Discarded Dengue | 0 | 1 | 6 | 6 | 0 | 3700 | 0 |
| ID_MN_RESI | Positive Chikungunya | 0 | 1 | 6 | 6 | 0 | 1176 | 0 |
| ID_MN_RESI | Positive Dengue | 0 | 1 | 6 | 6 | 0 | 3920 | 0 |
| CS_SEXO | Discarded Chikungunya | 0 | 1 | 8 | 9 | 0 | 3 | 0 |
| CS_SEXO | Discarded Dengue | 0 | 1 | 8 | 9 | 0 | 3 | 0 |
| CS_SEXO | Positive Chikungunya | 0 | 1 | 8 | 9 | 0 | 3 | 0 |
| CS_SEXO | Positive Dengue | 0 | 1 | 8 | 9 | 0 | 3 | 0 |
| CS_GESTANT | Discarded Chikungunya | 0 | 1 | 3 | 26 | 0 | 7 | 0 |
| CS_GESTANT | Discarded Dengue | 0 | 1 | 3 | 26 | 0 | 7 | 0 |
| CS_GESTANT | Positive Chikungunya | 0 | 1 | 3 | 26 | 0 | 7 | 0 |
| CS_GESTANT | Positive Dengue | 0 | 1 | 3 | 26 | 0 | 7 | 0 |
| case_source | Discarded Chikungunya | 0 | 1 | 17 | 17 | 0 | 1 | 0 |
| case_source | Discarded Dengue | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| case_source | Positive Chikungunya | 0 | 1 | 17 | 17 | 0 | 1 | 0 |
| case_source | Positive Dengue | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| uf_res | Discarded Chikungunya | 0 | 1 | 2 | 2 | 0 | 27 | 0 |
| uf_res | Discarded Dengue | 0 | 1 | 2 | 2 | 0 | 27 | 0 |
| uf_res | Positive Chikungunya | 0 | 1 | 2 | 2 | 0 | 27 | 0 |
| uf_res | Positive Dengue | 0 | 1 | 2 | 2 | 0 | 27 | 0 |
Variable type: Date
| skim_variable | CLASSI_FIN | n_missing | complete_rate | min | max | median | n_unique |
|---|---|---|---|---|---|---|---|
| DT_SIN_PRI | Discarded Chikungunya | 0 | 1 | 2016-02-02 | 2023-12-27 | 2021-07-12 | 2205 |
| DT_SIN_PRI | Discarded Dengue | 0 | 1 | 2016-01-01 | 2023-12-30 | 2020-05-21 | 2598 |
| DT_SIN_PRI | Positive Chikungunya | 0 | 1 | 2016-01-25 | 2023-12-29 | 2021-04-15 | 2138 |
| DT_SIN_PRI | Positive Dengue | 0 | 1 | 2016-01-01 | 2023-12-30 | 2021-04-30 | 2838 |
Variable type: logical
| skim_variable | CLASSI_FIN | n_missing | complete_rate | mean | count |
|---|---|---|---|---|---|
| FEBRE | Discarded Chikungunya | 0 | 1 | 0.83 | TRU: 6398, FAL: 1278 |
| FEBRE | Discarded Dengue | 0 | 1 | 0.73 | TRU: 64034, FAL: 23761 |
| FEBRE | Positive Chikungunya | 0 | 1 | 0.86 | TRU: 8807, FAL: 1399 |
| FEBRE | Positive Dengue | 0 | 1 | 0.76 | TRU: 74695, FAL: 23898 |
| MIALGIA | Discarded Chikungunya | 0 | 1 | 0.76 | TRU: 5845, FAL: 1831 |
| MIALGIA | Discarded Dengue | 0 | 1 | 0.67 | TRU: 59130, FAL: 28665 |
| MIALGIA | Positive Chikungunya | 0 | 1 | 0.74 | TRU: 7590, FAL: 2616 |
| MIALGIA | Positive Dengue | 0 | 1 | 0.69 | TRU: 68479, FAL: 30114 |
| CEFALEIA | Discarded Chikungunya | 0 | 1 | 0.74 | TRU: 5716, FAL: 1960 |
| CEFALEIA | Discarded Dengue | 0 | 1 | 0.69 | TRU: 60922, FAL: 26873 |
| CEFALEIA | Positive Chikungunya | 0 | 1 | 0.70 | TRU: 7105, FAL: 3101 |
| CEFALEIA | Positive Dengue | 0 | 1 | 0.70 | TRU: 68814, FAL: 29779 |
| EXANTEMA | Discarded Chikungunya | 0 | 1 | 0.23 | FAL: 5901, TRU: 1775 |
| EXANTEMA | Discarded Dengue | 0 | 1 | 0.12 | FAL: 77244, TRU: 10551 |
| EXANTEMA | Positive Chikungunya | 0 | 1 | 0.32 | FAL: 6902, TRU: 3304 |
| EXANTEMA | Positive Dengue | 0 | 1 | 0.19 | FAL: 79457, TRU: 19136 |
| VOMITO | Discarded Chikungunya | 0 | 1 | 0.22 | FAL: 5951, TRU: 1725 |
| VOMITO | Discarded Dengue | 0 | 1 | 0.21 | FAL: 68925, TRU: 18870 |
| VOMITO | Positive Chikungunya | 0 | 1 | 0.19 | FAL: 8256, TRU: 1950 |
| VOMITO | Positive Dengue | 0 | 1 | 0.20 | FAL: 78490, TRU: 20103 |
| NAUSEA | Discarded Chikungunya | 0 | 1 | 0.36 | FAL: 4885, TRU: 2791 |
| NAUSEA | Discarded Dengue | 0 | 1 | 0.33 | FAL: 59036, TRU: 28759 |
| NAUSEA | Positive Chikungunya | 0 | 1 | 0.33 | FAL: 6796, TRU: 3410 |
| NAUSEA | Positive Dengue | 0 | 1 | 0.34 | FAL: 64828, TRU: 33765 |
| DOR_COSTAS | Discarded Chikungunya | 0 | 1 | 0.41 | FAL: 4496, TRU: 3180 |
| DOR_COSTAS | Discarded Dengue | 0 | 1 | 0.29 | FAL: 62663, TRU: 25132 |
| DOR_COSTAS | Positive Chikungunya | 0 | 1 | 0.41 | FAL: 6055, TRU: 4151 |
| DOR_COSTAS | Positive Dengue | 0 | 1 | 0.29 | FAL: 70048, TRU: 28545 |
| CONJUNTVIT | Discarded Chikungunya | 0 | 1 | 0.07 | FAL: 7130, TRU: 546 |
| CONJUNTVIT | Discarded Dengue | 0 | 1 | 0.04 | FAL: 84560, TRU: 3235 |
| CONJUNTVIT | Positive Chikungunya | 0 | 1 | 0.07 | FAL: 9461, TRU: 745 |
| CONJUNTVIT | Positive Dengue | 0 | 1 | 0.04 | FAL: 95017, TRU: 3576 |
| ARTRITE | Discarded Chikungunya | 0 | 1 | 0.24 | FAL: 5806, TRU: 1870 |
| ARTRITE | Discarded Dengue | 0 | 1 | 0.10 | FAL: 78662, TRU: 9133 |
| ARTRITE | Positive Chikungunya | 0 | 1 | 0.29 | FAL: 7233, TRU: 2973 |
| ARTRITE | Positive Dengue | 0 | 1 | 0.11 | FAL: 88181, TRU: 10412 |
| ARTRALGIA | Discarded Chikungunya | 0 | 1 | 0.46 | FAL: 4179, TRU: 3497 |
| ARTRALGIA | Discarded Dengue | 0 | 1 | 0.18 | FAL: 72341, TRU: 15454 |
| ARTRALGIA | Positive Chikungunya | 0 | 1 | 0.63 | TRU: 6411, FAL: 3795 |
| ARTRALGIA | Positive Dengue | 0 | 1 | 0.17 | FAL: 81760, TRU: 16833 |
| PETEQUIA_N | Discarded Chikungunya | 0 | 1 | 0.11 | FAL: 6825, TRU: 851 |
| PETEQUIA_N | Discarded Dengue | 0 | 1 | 0.06 | FAL: 82510, TRU: 5285 |
| PETEQUIA_N | Positive Chikungunya | 0 | 1 | 0.13 | FAL: 8880, TRU: 1326 |
| PETEQUIA_N | Positive Dengue | 0 | 1 | 0.10 | FAL: 88466, TRU: 10127 |
| LEUCOPENIA | Discarded Chikungunya | 0 | 1 | 0.04 | FAL: 7404, TRU: 272 |
| LEUCOPENIA | Discarded Dengue | 0 | 1 | 0.03 | FAL: 85220, TRU: 2575 |
| LEUCOPENIA | Positive Chikungunya | 0 | 1 | 0.03 | FAL: 9890, TRU: 316 |
| LEUCOPENIA | Positive Dengue | 0 | 1 | 0.07 | FAL: 91876, TRU: 6717 |
| LACO | Discarded Chikungunya | 0 | 1 | 0.02 | FAL: 7529, TRU: 147 |
| LACO | Discarded Dengue | 0 | 1 | 0.03 | FAL: 85399, TRU: 2396 |
| LACO | Positive Chikungunya | 0 | 1 | 0.02 | FAL: 9991, TRU: 215 |
| LACO | Positive Dengue | 0 | 1 | 0.04 | FAL: 94399, TRU: 4194 |
| DOR_RETRO | Discarded Chikungunya | 0 | 1 | 0.27 | FAL: 5586, TRU: 2090 |
| DOR_RETRO | Discarded Dengue | 0 | 1 | 0.26 | FAL: 65119, TRU: 22676 |
| DOR_RETRO | Positive Chikungunya | 0 | 1 | 0.21 | FAL: 8071, TRU: 2135 |
| DOR_RETRO | Positive Dengue | 0 | 1 | 0.30 | FAL: 69216, TRU: 29377 |
| DIABETES | Discarded Chikungunya | 0 | 1 | 0.05 | FAL: 7324, TRU: 352 |
| DIABETES | Discarded Dengue | 0 | 1 | 0.03 | FAL: 85056, TRU: 2739 |
| DIABETES | Positive Chikungunya | 0 | 1 | 0.05 | FAL: 9700, TRU: 506 |
| DIABETES | Positive Dengue | 0 | 1 | 0.04 | FAL: 95077, TRU: 3516 |
| HEMATOLOG | Discarded Chikungunya | 0 | 1 | 0.01 | FAL: 7628, TRU: 48 |
| HEMATOLOG | Discarded Dengue | 0 | 1 | 0.01 | FAL: 87356, TRU: 439 |
| HEMATOLOG | Positive Chikungunya | 0 | 1 | 0.01 | FAL: 10147, TRU: 59 |
| HEMATOLOG | Positive Dengue | 0 | 1 | 0.01 | FAL: 98058, TRU: 535 |
| HEPATOPAT | Discarded Chikungunya | 0 | 1 | 0.01 | FAL: 7622, TRU: 54 |
| HEPATOPAT | Discarded Dengue | 0 | 1 | 0.01 | FAL: 87341, TRU: 454 |
| HEPATOPAT | Positive Chikungunya | 0 | 1 | 0.01 | FAL: 10154, TRU: 52 |
| HEPATOPAT | Positive Dengue | 0 | 1 | 0.01 | FAL: 98055, TRU: 538 |
| RENAL | Discarded Chikungunya | 0 | 1 | 0.01 | FAL: 7620, TRU: 56 |
| RENAL | Discarded Dengue | 0 | 1 | 0.01 | FAL: 87348, TRU: 447 |
| RENAL | Positive Chikungunya | 0 | 1 | 0.01 | FAL: 10149, TRU: 57 |
| RENAL | Positive Dengue | 0 | 1 | 0.01 | FAL: 98070, TRU: 523 |
| HIPERTENSA | Discarded Chikungunya | 0 | 1 | 0.10 | FAL: 6920, TRU: 756 |
| HIPERTENSA | Discarded Dengue | 0 | 1 | 0.07 | FAL: 81699, TRU: 6096 |
| HIPERTENSA | Positive Chikungunya | 0 | 1 | 0.13 | FAL: 8928, TRU: 1278 |
| HIPERTENSA | Positive Dengue | 0 | 1 | 0.09 | FAL: 90010, TRU: 8583 |
| ACIDO_PEPT | Discarded Chikungunya | 0 | 1 | 0.01 | FAL: 7630, TRU: 46 |
| ACIDO_PEPT | Discarded Dengue | 0 | 1 | 0.00 | FAL: 87362, TRU: 433 |
| ACIDO_PEPT | Positive Chikungunya | 0 | 1 | 0.01 | FAL: 10138, TRU: 68 |
| ACIDO_PEPT | Positive Dengue | 0 | 1 | 0.01 | FAL: 98047, TRU: 546 |
| AUTO_IMUNE | Discarded Chikungunya | 0 | 1 | 0.01 | FAL: 7598, TRU: 78 |
| AUTO_IMUNE | Discarded Dengue | 0 | 1 | 0.01 | FAL: 87283, TRU: 512 |
| AUTO_IMUNE | Positive Chikungunya | 0 | 1 | 0.01 | FAL: 10126, TRU: 80 |
| AUTO_IMUNE | Positive Dengue | 0 | 1 | 0.01 | FAL: 98029, TRU: 564 |
Variable type: numeric
| skim_variable | CLASSI_FIN | n_missing | complete_rate | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IDADEanos | Discarded Chikungunya | 0 | 1 | 3.21 | 1.90 | 0 | 2 | 3 | 5 | 10 | ▇▇▅▁▁ |
| IDADEanos | Discarded Dengue | 0 | 1 | 2.89 | 1.97 | 0 | 1 | 3 | 4 | 105 | ▇▁▁▁▁ |
| IDADEanos | Positive Chikungunya | 0 | 1 | 3.76 | 2.03 | 0 | 2 | 4 | 5 | 40 | ▇▁▁▁▁ |
| IDADEanos | Positive Dengue | 0 | 1 | 3.27 | 2.02 | 0 | 2 | 3 | 5 | 40 | ▇▁▁▁▁ |
Per year
dc_ref |>
group_by(year(DT_SIN_PRI)) |>
skim()| Name | group_by(dc_ref, year(DT_… |
| Number of rows | 204270 |
| Number of columns | 31 |
| _______________________ | |
| Column type frequency: | |
| character | 7 |
| Date | 1 |
| logical | 21 |
| numeric | 2 |
| ________________________ | |
| Group variables | year(DT_SIN_PRI) |
Variable type: character
| skim_variable | year(DT_SIN_PRI) | n_missing | complete_rate | min | max | empty | n_unique | whitespace |
|---|---|---|---|---|---|---|---|---|
| CLASSI_FIN | 2016 | 0 | 1 | 15 | 21 | 0 | 4 | 0 |
| CLASSI_FIN | 2017 | 0 | 1 | 15 | 21 | 0 | 4 | 0 |
| CLASSI_FIN | 2018 | 0 | 1 | 15 | 21 | 0 | 4 | 0 |
| CLASSI_FIN | 2019 | 0 | 1 | 15 | 21 | 0 | 4 | 0 |
| CLASSI_FIN | 2020 | 0 | 1 | 15 | 21 | 0 | 4 | 0 |
| CLASSI_FIN | 2021 | 0 | 1 | 15 | 21 | 0 | 4 | 0 |
| CLASSI_FIN | 2022 | 0 | 1 | 15 | 21 | 0 | 4 | 0 |
| CLASSI_FIN | 2023 | 0 | 1 | 15 | 21 | 0 | 4 | 0 |
| CRITERIO | 2016 | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| CRITERIO | 2017 | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| CRITERIO | 2018 | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| CRITERIO | 2019 | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| CRITERIO | 2020 | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| CRITERIO | 2021 | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| CRITERIO | 2022 | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| CRITERIO | 2023 | 0 | 1 | 12 | 12 | 0 | 1 | 0 |
| ID_MN_RESI | 2016 | 0 | 1 | 6 | 6 | 0 | 2388 | 0 |
| ID_MN_RESI | 2017 | 0 | 1 | 6 | 6 | 0 | 1491 | 0 |
| ID_MN_RESI | 2018 | 0 | 1 | 6 | 6 | 0 | 1461 | 0 |
| ID_MN_RESI | 2019 | 0 | 1 | 6 | 6 | 0 | 2491 | 0 |
| ID_MN_RESI | 2020 | 0 | 1 | 6 | 6 | 0 | 2262 | 0 |
| ID_MN_RESI | 2021 | 0 | 1 | 6 | 6 | 0 | 1918 | 0 |
| ID_MN_RESI | 2022 | 0 | 1 | 6 | 6 | 0 | 2500 | 0 |
| ID_MN_RESI | 2023 | 0 | 1 | 6 | 6 | 0 | 2990 | 0 |
| CS_SEXO | 2016 | 0 | 1 | 8 | 9 | 0 | 3 | 0 |
| CS_SEXO | 2017 | 0 | 1 | 8 | 9 | 0 | 3 | 0 |
| CS_SEXO | 2018 | 0 | 1 | 8 | 9 | 0 | 3 | 0 |
| CS_SEXO | 2019 | 0 | 1 | 8 | 9 | 0 | 3 | 0 |
| CS_SEXO | 2020 | 0 | 1 | 8 | 9 | 0 | 3 | 0 |
| CS_SEXO | 2021 | 0 | 1 | 8 | 9 | 0 | 3 | 0 |
| CS_SEXO | 2022 | 0 | 1 | 8 | 9 | 0 | 3 | 0 |
| CS_SEXO | 2023 | 0 | 1 | 8 | 9 | 0 | 3 | 0 |
| CS_GESTANT | 2016 | 0 | 1 | 3 | 26 | 0 | 7 | 0 |
| CS_GESTANT | 2017 | 0 | 1 | 3 | 26 | 0 | 7 | 0 |
| CS_GESTANT | 2018 | 0 | 1 | 3 | 26 | 0 | 7 | 0 |
| CS_GESTANT | 2019 | 0 | 1 | 3 | 26 | 0 | 7 | 0 |
| CS_GESTANT | 2020 | 0 | 1 | 3 | 26 | 0 | 7 | 0 |
| CS_GESTANT | 2021 | 0 | 1 | 3 | 26 | 0 | 7 | 0 |
| CS_GESTANT | 2022 | 0 | 1 | 3 | 26 | 0 | 7 | 0 |
| CS_GESTANT | 2023 | 0 | 1 | 3 | 26 | 0 | 7 | 0 |
| case_source | 2016 | 0 | 1 | 12 | 17 | 0 | 2 | 0 |
| case_source | 2017 | 0 | 1 | 12 | 17 | 0 | 2 | 0 |
| case_source | 2018 | 0 | 1 | 12 | 17 | 0 | 2 | 0 |
| case_source | 2019 | 0 | 1 | 12 | 17 | 0 | 2 | 0 |
| case_source | 2020 | 0 | 1 | 12 | 17 | 0 | 2 | 0 |
| case_source | 2021 | 0 | 1 | 12 | 17 | 0 | 2 | 0 |
| case_source | 2022 | 0 | 1 | 12 | 17 | 0 | 2 | 0 |
| case_source | 2023 | 0 | 1 | 12 | 17 | 0 | 2 | 0 |
| uf_res | 2016 | 0 | 1 | 2 | 2 | 0 | 27 | 0 |
| uf_res | 2017 | 0 | 1 | 2 | 2 | 0 | 27 | 0 |
| uf_res | 2018 | 0 | 1 | 2 | 2 | 0 | 26 | 0 |
| uf_res | 2019 | 0 | 1 | 2 | 2 | 0 | 27 | 0 |
| uf_res | 2020 | 0 | 1 | 2 | 2 | 0 | 27 | 0 |
| uf_res | 2021 | 0 | 1 | 2 | 2 | 0 | 26 | 0 |
| uf_res | 2022 | 0 | 1 | 2 | 2 | 0 | 26 | 0 |
| uf_res | 2023 | 0 | 1 | 2 | 2 | 0 | 27 | 0 |
Variable type: Date
| skim_variable | year(DT_SIN_PRI) | n_missing | complete_rate | min | max | median | n_unique |
|---|---|---|---|---|---|---|---|
| DT_SIN_PRI | 2016 | 0 | 1 | 2016-01-01 | 2016-12-31 | 2016-03-08 | 366 |
| DT_SIN_PRI | 2017 | 0 | 1 | 2017-01-01 | 2017-12-31 | 2017-04-29 | 365 |
| DT_SIN_PRI | 2018 | 0 | 1 | 2018-01-01 | 2018-12-31 | 2018-05-05 | 365 |
| DT_SIN_PRI | 2019 | 0 | 1 | 2019-01-01 | 2019-12-31 | 2019-04-26 | 365 |
| DT_SIN_PRI | 2020 | 0 | 1 | 2020-01-01 | 2020-12-31 | 2020-03-30 | 366 |
| DT_SIN_PRI | 2021 | 0 | 1 | 2021-01-01 | 2021-12-31 | 2021-04-24 | 365 |
| DT_SIN_PRI | 2022 | 0 | 1 | 2022-01-01 | 2022-12-31 | 2022-04-18 | 365 |
| DT_SIN_PRI | 2023 | 0 | 1 | 2023-01-01 | 2023-12-30 | 2023-04-20 | 364 |
Variable type: logical
| skim_variable | year(DT_SIN_PRI) | n_missing | complete_rate | mean | count |
|---|---|---|---|---|---|
| FEBRE | 2016 | 0 | 1 | 0.38 | FAL: 15765, TRU: 9679 |
| FEBRE | 2017 | 0 | 1 | 0.85 | TRU: 8351, FAL: 1456 |
| FEBRE | 2018 | 0 | 1 | 0.86 | TRU: 6918, FAL: 1116 |
| FEBRE | 2019 | 0 | 1 | 0.82 | TRU: 26169, FAL: 5697 |
| FEBRE | 2020 | 0 | 1 | 0.80 | TRU: 19457, FAL: 4803 |
| FEBRE | 2021 | 0 | 1 | 0.76 | TRU: 16178, FAL: 5065 |
| FEBRE | 2022 | 0 | 1 | 0.81 | TRU: 21399, FAL: 4869 |
| FEBRE | 2023 | 0 | 1 | 0.80 | TRU: 45783, FAL: 11565 |
| MIALGIA | 2016 | 0 | 1 | 0.32 | FAL: 17245, TRU: 8199 |
| MIALGIA | 2017 | 0 | 1 | 0.70 | TRU: 6883, FAL: 2924 |
| MIALGIA | 2018 | 0 | 1 | 0.73 | TRU: 5867, FAL: 2167 |
| MIALGIA | 2019 | 0 | 1 | 0.75 | TRU: 23822, FAL: 8044 |
| MIALGIA | 2020 | 0 | 1 | 0.76 | TRU: 18453, FAL: 5807 |
| MIALGIA | 2021 | 0 | 1 | 0.72 | TRU: 15213, FAL: 6030 |
| MIALGIA | 2022 | 0 | 1 | 0.74 | TRU: 19388, FAL: 6880 |
| MIALGIA | 2023 | 0 | 1 | 0.75 | TRU: 43219, FAL: 14129 |
| CEFALEIA | 2016 | 0 | 1 | 0.33 | FAL: 17056, TRU: 8388 |
| CEFALEIA | 2017 | 0 | 1 | 0.73 | TRU: 7117, FAL: 2690 |
| CEFALEIA | 2018 | 0 | 1 | 0.75 | TRU: 6000, FAL: 2034 |
| CEFALEIA | 2019 | 0 | 1 | 0.75 | TRU: 24018, FAL: 7848 |
| CEFALEIA | 2020 | 0 | 1 | 0.77 | TRU: 18788, FAL: 5472 |
| CEFALEIA | 2021 | 0 | 1 | 0.75 | TRU: 15875, FAL: 5368 |
| CEFALEIA | 2022 | 0 | 1 | 0.74 | TRU: 19326, FAL: 6942 |
| CEFALEIA | 2023 | 0 | 1 | 0.75 | TRU: 43045, FAL: 14303 |
| EXANTEMA | 2016 | 0 | 1 | 0.09 | FAL: 23051, TRU: 2393 |
| EXANTEMA | 2017 | 0 | 1 | 0.23 | FAL: 7524, TRU: 2283 |
| EXANTEMA | 2018 | 0 | 1 | 0.24 | FAL: 6105, TRU: 1929 |
| EXANTEMA | 2019 | 0 | 1 | 0.25 | FAL: 23919, TRU: 7947 |
| EXANTEMA | 2020 | 0 | 1 | 0.25 | FAL: 18237, TRU: 6023 |
| EXANTEMA | 2021 | 0 | 1 | 0.19 | FAL: 17265, TRU: 3978 |
| EXANTEMA | 2022 | 0 | 1 | 0.16 | FAL: 21958, TRU: 4310 |
| EXANTEMA | 2023 | 0 | 1 | 0.10 | FAL: 51445, TRU: 5903 |
| VOMITO | 2016 | 0 | 1 | 0.09 | FAL: 23240, TRU: 2204 |
| VOMITO | 2017 | 0 | 1 | 0.23 | FAL: 7534, TRU: 2273 |
| VOMITO | 2018 | 0 | 1 | 0.26 | FAL: 5982, TRU: 2052 |
| VOMITO | 2019 | 0 | 1 | 0.23 | FAL: 24394, TRU: 7472 |
| VOMITO | 2020 | 0 | 1 | 0.20 | FAL: 19407, TRU: 4853 |
| VOMITO | 2021 | 0 | 1 | 0.20 | FAL: 17010, TRU: 4233 |
| VOMITO | 2022 | 0 | 1 | 0.22 | FAL: 20452, TRU: 5816 |
| VOMITO | 2023 | 0 | 1 | 0.24 | FAL: 43603, TRU: 13745 |
| NAUSEA | 2016 | 0 | 1 | 0.12 | FAL: 22420, TRU: 3024 |
| NAUSEA | 2017 | 0 | 1 | 0.36 | FAL: 6317, TRU: 3490 |
| NAUSEA | 2018 | 0 | 1 | 0.40 | FAL: 4848, TRU: 3186 |
| NAUSEA | 2019 | 0 | 1 | 0.39 | FAL: 19401, TRU: 12465 |
| NAUSEA | 2020 | 0 | 1 | 0.37 | FAL: 15303, TRU: 8957 |
| NAUSEA | 2021 | 0 | 1 | 0.33 | FAL: 14161, TRU: 7082 |
| NAUSEA | 2022 | 0 | 1 | 0.36 | FAL: 16705, TRU: 9563 |
| NAUSEA | 2023 | 0 | 1 | 0.37 | FAL: 36390, TRU: 20958 |
| DOR_COSTAS | 2016 | 0 | 1 | 0.08 | FAL: 23453, TRU: 1991 |
| DOR_COSTAS | 2017 | 0 | 1 | 0.35 | FAL: 6362, TRU: 3445 |
| DOR_COSTAS | 2018 | 0 | 1 | 0.36 | FAL: 5133, TRU: 2901 |
| DOR_COSTAS | 2019 | 0 | 1 | 0.34 | FAL: 20980, TRU: 10886 |
| DOR_COSTAS | 2020 | 0 | 1 | 0.37 | FAL: 15259, TRU: 9001 |
| DOR_COSTAS | 2021 | 0 | 1 | 0.34 | FAL: 13964, TRU: 7279 |
| DOR_COSTAS | 2022 | 0 | 1 | 0.32 | FAL: 17883, TRU: 8385 |
| DOR_COSTAS | 2023 | 0 | 1 | 0.30 | FAL: 40228, TRU: 17120 |
| CONJUNTVIT | 2016 | 0 | 1 | 0.01 | FAL: 25088, TRU: 356 |
| CONJUNTVIT | 2017 | 0 | 1 | 0.05 | FAL: 9302, TRU: 505 |
| CONJUNTVIT | 2018 | 0 | 1 | 0.06 | FAL: 7554, TRU: 480 |
| CONJUNTVIT | 2019 | 0 | 1 | 0.04 | FAL: 30456, TRU: 1410 |
| CONJUNTVIT | 2020 | 0 | 1 | 0.05 | FAL: 23143, TRU: 1117 |
| CONJUNTVIT | 2021 | 0 | 1 | 0.05 | FAL: 20247, TRU: 996 |
| CONJUNTVIT | 2022 | 0 | 1 | 0.04 | FAL: 25199, TRU: 1069 |
| CONJUNTVIT | 2023 | 0 | 1 | 0.04 | FAL: 55179, TRU: 2169 |
| ARTRITE | 2016 | 0 | 1 | 0.03 | FAL: 24669, TRU: 775 |
| ARTRITE | 2017 | 0 | 1 | 0.17 | FAL: 8137, TRU: 1670 |
| ARTRITE | 2018 | 0 | 1 | 0.17 | FAL: 6695, TRU: 1339 |
| ARTRITE | 2019 | 0 | 1 | 0.14 | FAL: 27375, TRU: 4491 |
| ARTRITE | 2020 | 0 | 1 | 0.15 | FAL: 20665, TRU: 3595 |
| ARTRITE | 2021 | 0 | 1 | 0.14 | FAL: 18272, TRU: 2971 |
| ARTRITE | 2022 | 0 | 1 | 0.13 | FAL: 22846, TRU: 3422 |
| ARTRITE | 2023 | 0 | 1 | 0.11 | FAL: 51223, TRU: 6125 |
| ARTRALGIA | 2016 | 0 | 1 | 0.09 | FAL: 23199, TRU: 2245 |
| ARTRALGIA | 2017 | 0 | 1 | 0.35 | FAL: 6402, TRU: 3405 |
| ARTRALGIA | 2018 | 0 | 1 | 0.31 | FAL: 5533, TRU: 2501 |
| ARTRALGIA | 2019 | 0 | 1 | 0.24 | FAL: 24234, TRU: 7632 |
| ARTRALGIA | 2020 | 0 | 1 | 0.22 | FAL: 18907, TRU: 5353 |
| ARTRALGIA | 2021 | 0 | 1 | 0.21 | FAL: 16676, TRU: 4567 |
| ARTRALGIA | 2022 | 0 | 1 | 0.23 | FAL: 20345, TRU: 5923 |
| ARTRALGIA | 2023 | 0 | 1 | 0.18 | FAL: 46779, TRU: 10569 |
| PETEQUIA_N | 2016 | 0 | 1 | 0.03 | FAL: 24727, TRU: 717 |
| PETEQUIA_N | 2017 | 0 | 1 | 0.09 | FAL: 8925, TRU: 882 |
| PETEQUIA_N | 2018 | 0 | 1 | 0.11 | FAL: 7179, TRU: 855 |
| PETEQUIA_N | 2019 | 0 | 1 | 0.12 | FAL: 28172, TRU: 3694 |
| PETEQUIA_N | 2020 | 0 | 1 | 0.12 | FAL: 21366, TRU: 2894 |
| PETEQUIA_N | 2021 | 0 | 1 | 0.11 | FAL: 18824, TRU: 2419 |
| PETEQUIA_N | 2022 | 0 | 1 | 0.10 | FAL: 23602, TRU: 2666 |
| PETEQUIA_N | 2023 | 0 | 1 | 0.06 | FAL: 53886, TRU: 3462 |
| LEUCOPENIA | 2016 | 0 | 1 | 0.02 | FAL: 24927, TRU: 517 |
| LEUCOPENIA | 2017 | 0 | 1 | 0.05 | FAL: 9361, TRU: 446 |
| LEUCOPENIA | 2018 | 0 | 1 | 0.06 | FAL: 7523, TRU: 511 |
| LEUCOPENIA | 2019 | 0 | 1 | 0.07 | FAL: 29650, TRU: 2216 |
| LEUCOPENIA | 2020 | 0 | 1 | 0.07 | FAL: 22489, TRU: 1771 |
| LEUCOPENIA | 2021 | 0 | 1 | 0.04 | FAL: 20309, TRU: 934 |
| LEUCOPENIA | 2022 | 0 | 1 | 0.06 | FAL: 24721, TRU: 1547 |
| LEUCOPENIA | 2023 | 0 | 1 | 0.03 | FAL: 55410, TRU: 1938 |
| LACO | 2016 | 0 | 1 | 0.01 | FAL: 25073, TRU: 371 |
| LACO | 2017 | 0 | 1 | 0.03 | FAL: 9547, TRU: 260 |
| LACO | 2018 | 0 | 1 | 0.03 | FAL: 7759, TRU: 275 |
| LACO | 2019 | 0 | 1 | 0.05 | FAL: 30353, TRU: 1513 |
| LACO | 2020 | 0 | 1 | 0.05 | FAL: 23003, TRU: 1257 |
| LACO | 2021 | 0 | 1 | 0.04 | FAL: 20445, TRU: 798 |
| LACO | 2022 | 0 | 1 | 0.03 | FAL: 25397, TRU: 871 |
| LACO | 2023 | 0 | 1 | 0.03 | FAL: 55741, TRU: 1607 |
| DOR_RETRO | 2016 | 0 | 1 | 0.11 | FAL: 22600, TRU: 2844 |
| DOR_RETRO | 2017 | 0 | 1 | 0.28 | FAL: 7102, TRU: 2705 |
| DOR_RETRO | 2018 | 0 | 1 | 0.31 | FAL: 5553, TRU: 2481 |
| DOR_RETRO | 2019 | 0 | 1 | 0.35 | FAL: 20664, TRU: 11202 |
| DOR_RETRO | 2020 | 0 | 1 | 0.37 | FAL: 15400, TRU: 8860 |
| DOR_RETRO | 2021 | 0 | 1 | 0.29 | FAL: 14987, TRU: 6256 |
| DOR_RETRO | 2022 | 0 | 1 | 0.27 | FAL: 19292, TRU: 6976 |
| DOR_RETRO | 2023 | 0 | 1 | 0.26 | FAL: 42394, TRU: 14954 |
| DIABETES | 2016 | 0 | 1 | 0.01 | FAL: 25259, TRU: 185 |
| DIABETES | 2017 | 0 | 1 | 0.03 | FAL: 9491, TRU: 316 |
| DIABETES | 2018 | 0 | 1 | 0.03 | FAL: 7794, TRU: 240 |
| DIABETES | 2019 | 0 | 1 | 0.04 | FAL: 30690, TRU: 1176 |
| DIABETES | 2020 | 0 | 1 | 0.04 | FAL: 23221, TRU: 1039 |
| DIABETES | 2021 | 0 | 1 | 0.04 | FAL: 20359, TRU: 884 |
| DIABETES | 2022 | 0 | 1 | 0.04 | FAL: 25209, TRU: 1059 |
| DIABETES | 2023 | 0 | 1 | 0.04 | FAL: 55134, TRU: 2214 |
| HEMATOLOG | 2016 | 0 | 1 | 0.00 | FAL: 25397, TRU: 47 |
| HEMATOLOG | 2017 | 0 | 1 | 0.01 | FAL: 9741, TRU: 66 |
| HEMATOLOG | 2018 | 0 | 1 | 0.00 | FAL: 8000, TRU: 34 |
| HEMATOLOG | 2019 | 0 | 1 | 0.01 | FAL: 31685, TRU: 181 |
| HEMATOLOG | 2020 | 0 | 1 | 0.01 | FAL: 24118, TRU: 142 |
| HEMATOLOG | 2021 | 0 | 1 | 0.01 | FAL: 21113, TRU: 130 |
| HEMATOLOG | 2022 | 0 | 1 | 0.01 | FAL: 26103, TRU: 165 |
| HEMATOLOG | 2023 | 0 | 1 | 0.01 | FAL: 57032, TRU: 316 |
| HEPATOPAT | 2016 | 0 | 1 | 0.00 | FAL: 25381, TRU: 63 |
| HEPATOPAT | 2017 | 0 | 1 | 0.01 | FAL: 9752, TRU: 55 |
| HEPATOPAT | 2018 | 0 | 1 | 0.01 | FAL: 7989, TRU: 45 |
| HEPATOPAT | 2019 | 0 | 1 | 0.01 | FAL: 31684, TRU: 182 |
| HEPATOPAT | 2020 | 0 | 1 | 0.01 | FAL: 24098, TRU: 162 |
| HEPATOPAT | 2021 | 0 | 1 | 0.01 | FAL: 21106, TRU: 137 |
| HEPATOPAT | 2022 | 0 | 1 | 0.01 | FAL: 26111, TRU: 157 |
| HEPATOPAT | 2023 | 0 | 1 | 0.01 | FAL: 57051, TRU: 297 |
| RENAL | 2016 | 0 | 1 | 0.00 | FAL: 25401, TRU: 43 |
| RENAL | 2017 | 0 | 1 | 0.01 | FAL: 9747, TRU: 60 |
| RENAL | 2018 | 0 | 1 | 0.00 | FAL: 7994, TRU: 40 |
| RENAL | 2019 | 0 | 1 | 0.01 | FAL: 31696, TRU: 170 |
| RENAL | 2020 | 0 | 1 | 0.01 | FAL: 24097, TRU: 163 |
| RENAL | 2021 | 0 | 1 | 0.01 | FAL: 21095, TRU: 148 |
| RENAL | 2022 | 0 | 1 | 0.01 | FAL: 26121, TRU: 147 |
| RENAL | 2023 | 0 | 1 | 0.01 | FAL: 57036, TRU: 312 |
| HIPERTENSA | 2016 | 0 | 1 | 0.02 | FAL: 25008, TRU: 436 |
| HIPERTENSA | 2017 | 0 | 1 | 0.07 | FAL: 9090, TRU: 717 |
| HIPERTENSA | 2018 | 0 | 1 | 0.08 | FAL: 7400, TRU: 634 |
| HIPERTENSA | 2019 | 0 | 1 | 0.09 | FAL: 29045, TRU: 2821 |
| HIPERTENSA | 2020 | 0 | 1 | 0.11 | FAL: 21705, TRU: 2555 |
| HIPERTENSA | 2021 | 0 | 1 | 0.10 | FAL: 19201, TRU: 2042 |
| HIPERTENSA | 2022 | 0 | 1 | 0.10 | FAL: 23674, TRU: 2594 |
| HIPERTENSA | 2023 | 0 | 1 | 0.09 | FAL: 52434, TRU: 4914 |
| ACIDO_PEPT | 2016 | 0 | 1 | 0.00 | FAL: 25384, TRU: 60 |
| ACIDO_PEPT | 2017 | 0 | 1 | 0.01 | FAL: 9750, TRU: 57 |
| ACIDO_PEPT | 2018 | 0 | 1 | 0.01 | FAL: 7964, TRU: 70 |
| ACIDO_PEPT | 2019 | 0 | 1 | 0.01 | FAL: 31674, TRU: 192 |
| ACIDO_PEPT | 2020 | 0 | 1 | 0.01 | FAL: 24105, TRU: 155 |
| ACIDO_PEPT | 2021 | 0 | 1 | 0.01 | FAL: 21125, TRU: 118 |
| ACIDO_PEPT | 2022 | 0 | 1 | 0.01 | FAL: 26120, TRU: 148 |
| ACIDO_PEPT | 2023 | 0 | 1 | 0.01 | FAL: 57055, TRU: 293 |
| AUTO_IMUNE | 2016 | 0 | 1 | 0.00 | FAL: 25407, TRU: 37 |
| AUTO_IMUNE | 2017 | 0 | 1 | 0.01 | FAL: 9737, TRU: 70 |
| AUTO_IMUNE | 2018 | 0 | 1 | 0.01 | FAL: 7986, TRU: 48 |
| AUTO_IMUNE | 2019 | 0 | 1 | 0.01 | FAL: 31665, TRU: 201 |
| AUTO_IMUNE | 2020 | 0 | 1 | 0.01 | FAL: 24101, TRU: 159 |
| AUTO_IMUNE | 2021 | 0 | 1 | 0.01 | FAL: 21103, TRU: 140 |
| AUTO_IMUNE | 2022 | 0 | 1 | 0.01 | FAL: 26111, TRU: 157 |
| AUTO_IMUNE | 2023 | 0 | 1 | 0.01 | FAL: 56926, TRU: 422 |
Variable type: numeric
| skim_variable | year(DT_SIN_PRI) | n_missing | complete_rate | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IDADEanos | 2016 | 0 | 1 | 3.06 | 1.95 | 0 | 2 | 3 | 4 | 40 | ▇▁▁▁▁ |
| IDADEanos | 2017 | 0 | 1 | 3.02 | 2.21 | 0 | 1 | 3 | 4 | 105 | ▇▁▁▁▁ |
| IDADEanos | 2018 | 0 | 1 | 2.98 | 1.92 | 0 | 2 | 3 | 4 | 10 | ▇▆▃▁▁ |
| IDADEanos | 2019 | 0 | 1 | 3.09 | 2.01 | 0 | 2 | 3 | 5 | 40 | ▇▁▁▁▁ |
| IDADEanos | 2020 | 0 | 1 | 3.24 | 1.98 | 0 | 2 | 3 | 5 | 40 | ▇▁▁▁▁ |
| IDADEanos | 2021 | 0 | 1 | 3.18 | 1.89 | 0 | 2 | 3 | 4 | 10 | ▇▇▅▁▁ |
| IDADEanos | 2022 | 0 | 1 | 3.33 | 2.06 | 0 | 2 | 3 | 5 | 10 | ▇▇▅▂▁ |
| IDADEanos | 2023 | 0 | 1 | 3.06 | 2.02 | 0 | 1 | 3 | 4 | 40 | ▇▁▁▁▁ |
| year(DT_SIN_PRI) | 2016 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| year(DT_SIN_PRI) | 2017 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| year(DT_SIN_PRI) | 2018 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| year(DT_SIN_PRI) | 2019 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| year(DT_SIN_PRI) | 2020 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| year(DT_SIN_PRI) | 2021 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| year(DT_SIN_PRI) | 2022 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| year(DT_SIN_PRI) | 2023 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |